Open Source Projects

everything-ai

Introducing everything-ai, your fully proficient, multi-tasking, local AI assistant!🤖

AIMulti-TaskingHuggingface

Code

qdurllm

Search your favorite websites and chat with them, on your desktop🌐

AILocal-Search-EngineQdrant

Code

proteinviz

Your open-source alternative to AlphaFold3🚀

AIProteinsAlphaFold

Code

proteins-w-esm

Predict the whole sequence and 3D structure of masked protein sequences with ESM by EvolutionaryScaleAI

AIProteinsESM

Code

BLAST-SummarAIzer

An easy-to-use, intuitive chat interface to ease and speed BLAST results interpretation, starting from 16S rRNA local blasting within the Docker container or from a Description Table (CSV) downloaded from online BLAST results.

BLASTBioinformaticsAI

Code

saccharomyces-pythia

A Voting Classifier program aimed at being a fully proficient AI/ML assistant for Saccharomyces cerevisiae (and other organisms)

VotingClassifierscikit-learnGene calling

Code

distilgpt2-finetuned-microbiology

Small model for language modeling based on distilgpt2 and on microbiology-related text data

DistilGPT2Finetuned modelHuggingface

Code

VirBiCla

A novel ML-based binary classifier to tell viral and non-viral long reads apart in metagenomic samples.

ViromeGenomicsVotingClassifier

Code

resistML

A tool for AMR gene family prediction, simple and ML-based

BacterialAntibiotic resistanceHealthcare

Code

awesome-tiny-sd

Tiny stable diffusion chatbot based on segmind/small-sd to generate images upon text prompts

computer-visionGenerative AIstable-diffusion

Code

BiomedicalPapersBot

A Telegram bot to retrieve PubMed papers' title, doi, authors and publication date based on general search terms or on specific publication names

Telegram botAutomationPapersAcademic resourcesAcademic papers

CodeDemo

Co(de)Pilot Bot

Discord bot that helps coders by refactoring their code and giving advice to them. Based on Jan.ai API

DiscordCode automationJanAIDeepseek-coderPython

Code

RespectFeelNess Bot

Discord bot that helps users by providing emotional support to them. Based on Jan.ai API

DiscordEmotional agentJanAILLAMAPython

Code

jan-scraper

Interact with Jan.ai by sending messages and retrieving the response

PyPiJanAILLMsChatbots

CodePyPi

simON-reads

simON-reads (Simulate Oxford Nanopore Reads) is a simple yet powerful tool to generate fastq files containing MiniON-like long reads

Oxford NanoporeGenomicsAutomation testing

Code

Word-Doc-2-HTML

Python Desktop application to convert Word Documents to HTML - based on mammoth-python

Python appFront endAutomation

Code

altrevis

An easy-to-use, beginner-oriented tool to align DNA/RNA or protein sequences, infer an approximately Maximum Likelihood phylogenetic tree from the alignment and visualize it

PhylogeneticsBeginner-orientedBash

Code

PredGenesGetPepts

PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database

Gene callingBeginner-orientedBash

Code